Package: dosresmeta 2.1.1

Alessio Crippa

dosresmeta: Multivariate Dose-Response Meta-Analysis

Estimates dose-response relations from summarized dose-response data and to combines them according to principles of (multivariate) random-effects models.

Authors:Alessio Crippa [aut, cre]

dosresmeta_2.1.1.tar.gz
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dosresmeta.pdf |dosresmeta.html✨
dosresmeta/json (API)

# Install 'dosresmeta' in R:
install.packages('dosresmeta', repos = c('https://alecri.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/alecri/dosresmeta/issues

Datasets:
  • alcohol_crc - Eight published studies on the relation between alcohol intake and colorectal cancer
  • alcohol_cvd - Six published studies on the relation between alcohol intake and cardiovascular disease risk
  • alcohol_esoph - Fourteen case-control studies on the relation between alcohol consumption and esophageal cancer
  • alcohol_lc - Four published studies on the relation between alcohol intake and lung cancer
  • ari - Five clinical trials on the relation between aripiprazole and schizophrenia
  • bmi_rc - Four case-control studies on the relation between Body Mass Index and renal cell cancer
  • cc_ex - Case-control data on alcohol and breast cancer risk
  • ci_ex - Cumulative incidence data on high-fat dairy food and colorectal cancer risk
  • coffee_cancer - Eight prospective studies on the relation between coffee consumption and cancer mortality
  • coffee_cvd - Thirteen prospective studies on the relation between coffee consumption and cardiovascular mortality
  • coffee_mort - Twenty-one prospective studies on the relation between coffee consumption and all-cause mortality
  • coffee_mort_add - Additional two prospective studies on the relation between coffee consumption and all-cause mortality
  • coffee_stroke - Eleven prospective studies on the relation between coffee consumption and stroke risk
  • fish_ra - Six studies on the relation between fish consumption and rheumatoid arthritis risk
  • ir_ex - Incidence-rate data on fiber intake and coronary heart disease risk
  • milk_mort - Eleven prospective studies on the relation between milk consumption and all-cause mortality
  • milk_ov - Nine studies on the relation between milk consumption and ovarian cancer
  • oc_breast - Twenty-two case-control studies on the relation between oral contraceptives use and breast cancer
  • process_bc - Ten studies on the relation between processed meat and bladder cancer
  • red_bc - Twelve studies on the relation between red meat and bladder cancer
  • sim_os - Simulated data for one-stage dose-response meta-analysis

On CRAN:

12 exports 12 stars 3.99 score 1 dependencies 27 mentions 61 scripts 341 downloads

Last updated 5 years agofrom:dcc47a98d2. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 10 2024
R-4.5-winNOTESep 10 2024
R-4.5-linuxNOTESep 10 2024
R-4.4-winOKSep 10 2024
R-4.4-macOKSep 10 2024
R-4.3-winNOTESep 10 2024
R-4.3-macNOTESep 10 2024

Exports:covar.logrrcovar.smddosresmetadosresmeta.controldosresmeta.fitfpgridfracpolgofgrlhamlingvpcwaldtest

Dependencies:mixmeta

dosresmeta

Rendered fromdosresmeta.Rnwusingknitr::knitron Sep 10 2024.

Last update: 2017-09-05
Started: 2017-09-05

Readme and manuals

Help Manual

Help pageTopics
Multivariate dose-response meta-analysisdosresmeta-package
Eight published studies on the relation between alcohol intake and colorectal canceralcohol_crc
Six published studies on the relation between alcohol intake and cardiovascular disease riskalcohol_cvd
Fourteen case-control studies on the relation between alcohol consumption and esophageal canceralcohol_esoph
Four published studies on the relation between alcohol intake and lung canceralcohol_lc
Five clinical trials on the relation between aripiprazole and schizophreniaari
Best Linear Unbiased Predictions from dosresmeta Modelsblup.dosresmeta
Four case-control studies on the relation between Body Mass Index and renal cell cancerbmi_rc
Case-control data on alcohol and breast cancer riskcc_ex
Cumulative incidence data on high-fat dairy food and colorectal cancer riskci_ex
Extract Coefficients and (Co)Variance Matrix from dosresmeta Objectscoef.dosresmeta vcov.dosresmeta
Eight prospective studies on the relation between coffee consumption and cancer mortalitycoffee_cancer
Thirteen prospective studies on the relation between coffee consumption and cardiovascular mortalitycoffee_cvd
Twenty-one prospective studies on the relation between coffee consumption and all-cause mortalitycoffee_mort
Additional two prospective studies on the relation between coffee consumption and all-cause mortalitycoffee_mort_add
Eleven prospective studies on the relation between coffee consumption and stroke riskcoffee_stroke
Computes the covariance matrix for a set of log relative riskscovar.logrr
Computes mean and standardized mean differences for continuous outcome with corresponding co(variance) matrixcovar.smd
Multivariate Dose-Response Meta-Analysisdosresmeta dosresmeta.fit
Ancillary Parameters for Controlling the Fit in dosresmeta Modelsdosresmeta.control
Fixed-Effects Estimator for dosresmeta Modelsdosresmeta.fixed
ML and REML Estimators for dosresmeta Modelsdosresmeta.ml dosresmeta.reml
dosresmeta ObjectdosresmetaObject
Six studies on the relation between fish consumption and rheumatoid arthritis riskfish_ra
Grid with combinations of p for two-order fractional polynomialsfpgrid
Fractional Polynomialsfracpol
Computes statistics to evaluate the goodness-of-fit from dosresmeta Objectsgof print.gof.dosresmeta
Approximating effective-counts as proposed by Greenland & Longneckergrl
Approximating effective-counts as proposed by Hamlinghamling
Incidence-rate data on fiber intake and coronary heart disease riskir_ex
Extract Log-Likelihood from dosresmeta ObjectslogLik.dosresmeta
Eleven prospective studies on the relation between milk consumption and all-cause mortalitymilk_mort
Nine studies on the relation between milk consumption and ovarian cancermilk_ov
Likelihood Functions for dosresmeta Modelsiter.igls mlprof.fn mlprof.fun mlprof.gr remlprof.fn remlprof.gr
Twenty-two case-control studies on the relation between oral contraceptives use and breast canceroc_breast
Predicted Values from dosresmeta Modelspredict.dosresmeta
Summarizing dosresmeta Modelsprint.dosresmeta print.summary.dosresmeta summary.dosresmeta
Ten studies on the relation between processed meat and bladder cancerprocess_bc
Cochran Q Test of Heterogeneity for dosresmeta Modelsprint.qtest.dosresmeta qtest.dosresmeta
Twelve studies on the relation between red meat and bladder cancerred_bc
Simulated data for one-stage dose-response meta-analysissim_os
Variance Partition Components for dosresmeta Objectsvpc
Wald Test for Model Coefficientsprint.waldtest waldtest